Package: naturaList 0.5.2

naturaList: Classify Occurrences by Confidence Levels in the Species ID

Classify occurrence records based on confidence levels of species identification. In addition, implement tools to filter occurrences inside grid cells and to manually check for possibles errors with an interactive shiny application.

Authors:Arthur Vinicius Rodrigues [aut, cre], Gabriel Nakamura [aut], Leandro Duarte [aut]

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naturaList.pdf |naturaList.html✨
naturaList/json (API)
NEWS

# Install 'naturaList' in R:
install.packages('naturaList', repos = c('https://avrodrigues.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/avrodrigues/naturalist/issues

Datasets:
  • A.setosa - Occurrence records of Alsophila setosa downloaded from Global Biodiversity Information Facility (GBIF).
  • BR - Brazil boundary
  • cyathea.br - Occurrence records of Cyathea species in Brazil downloaded from Global Biodiversity Information Facility (GBIF).
  • r.temp.prec - Raster of temperature and precipitation
  • spec_names_ex - Example of specialist names with accent marks
  • speciaLists - Specialists of ferns and lycophytes of Brazil

On CRAN:

4.66 score 23 scripts 238 downloads 9 exports 97 dependencies

Last updated 10 months agofrom:aaf6811f8f. Checks:OK: 3 NOTE: 4. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 02 2024
R-4.5-winOKNov 02 2024
R-4.5-linuxOKNov 02 2024
R-4.4-winNOTENov 02 2024
R-4.4-macNOTENov 02 2024
R-4.3-winNOTENov 02 2024
R-4.3-macNOTENov 02 2024

Exports:%>%classify_occclean_evalcreate_spec_dfdefine_env_spaceenv_grid_filterget_det_namesgrid_filtermap_module

Dependencies:base64encBHbslibcachemclassclassIntcliclustercolorspacecommonmarkcrayoncrosstalkDBIdigestdplyre1071evaluatefansifarverfasterizefastmapfontawesomefsgenericsgluehighrhtmltoolshtmlwidgetshttpuvjaneaustenrjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevalleafletleaflet.extrasleaflet.providerslifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmeNLPpermutepillarpkgconfigpngpromisesproxypurrrR6rappdirsrasterRColorBrewerRcppRcppArmadillorlangrmarkdowns2sassscalessfshinyshinydashboardshinyWidgetsslamSnowballCsourcetoolsspstringistringrterratibbletidyselecttidytexttinytextmtokenizersunitsutf8vctrsveganviridisLitewithrwkxfunxml2xtableyaml

Interacting with naturaList: the map_module() function

Rendered fromnaturaList_map_module_vignette.Rmdusingknitr::rmarkdownon Nov 02 2024.

Last update: 2021-08-11
Started: 2021-03-10

Filter the best classified occurrences within grid cells

Rendered fromnaturaList_grid_filter_vignette.Rmdusingknitr::rmarkdownon Nov 02 2024.

Last update: 2021-05-05
Started: 2021-03-10

Evaluating the filtering process with naturaList

Rendered fromnatutaList_clean_eval_vignette.Rmdusingknitr::rmarkdownon Nov 02 2024.

Last update: 2021-10-14
Started: 2021-03-10

Introduction to naturaList

Rendered fromnatutaList_vignette.Rmdusingknitr::rmarkdownon Nov 02 2024.

Last update: 2021-08-23
Started: 2020-02-05